PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005985
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 219aa    MW: 24635.6 Da    PI: 5.4657
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005985genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-1885136256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+++AeIrd +    +  r++lg+f++ae Aa a+++a+ +++g+
  Cla005985  85 SYRGVRRRP-WGKYAAEIRDSTR---HgVRVWLGTFDSAEAAALAYDQAAFSMRGA 136
                69*******.**********422...25*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.03785143IPR001471AP2/ERF domain
SMARTSM003806.7E-3685149IPR001471AP2/ERF domain
PfamPF008471.2E-1385135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-3085144IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2285145IPR016177DNA-binding domain
PRINTSPR003672.7E-108697IPR001471AP2/ERF domain
CDDcd000182.08E-1986144No hitNo description
PRINTSPR003672.7E-10109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MESSYFSFSD SDFSTESSFG SAESSFSWSE FFSIHSTLEN SISLHGEFLG NQTSESESKI  60
VVKEETEVSS IDFEEEKERK TTEKSYRGVR RRPWGKYAAE IRDSTRHGVR VWLGTFDSAE  120
AAALAYDQAA FSMRGAMAVL NFPVEMVRES LKDIKYQLEE GCSPVVALKR KHSMRRKSAA  180
AAVKSQGAAE KKKMKKNNNV VILEDLGTEY LEELLMLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2684146163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818270.0LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004151982.11e-102PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC85e-62ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0A0L7G21e-102A0A0A0L7G2_CUCSA; Uncharacterized protein
STRINGPOPTR_0005s24460.18e-65(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-47ethylene response factor 1